FoldARE: Folding and Analysis of RNA Ensembles
developed by RDDS group
FoldAREpredict
Predict RNA secondary structures with a two steps pseudo-SHAPE generative strategy
▶ FoldARE-predict
generatepsSHAPE
Generate pseudoSHAPE: process RNA ensembles, to generate custom pseudo-SHAPE data (e.g. for FoldARE-predict).
▶ psSHAPER
comparepair
Pairwise RNA (2D) structural comparison - focused at ensemble level, with interactive graphical outputs
▶ compare pair
comparem6A
Analysis of structural effects of m6A modifications on RNA (2D) structural ensembles, with interactive graphical outputs
▶ compare m6A
compareall
Multiple RNA (2D) structural analysis - focused at ensemble level, with aggregate scoring
▶ compare all
About FoldARE
FoldARE provides a suite of tools for RNA secondary structure prediction and analysis.
--> doi:10.64898/2026.03.04.709501
Each service is optimized for specific tasks:
• FoldARE-predict — RNA secondary structure prediction
• psSHAPER — derive custom pseudo-SHAPE from user ensemble data
• compare pair — pairwise structural ensembles comparison
• compare m6A — analysis of m6A modification effects
• compare all — multiple structural ensembles comparison
Click on any service above to launch the corresponding analysis tool.