FoldARE-compare2

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COMPARE pair -- Input Sequence

Paste your FASTA sequence (max length = 1000):

(loads test sequence)

Parameters

-e1 (choose ensembler 1):	(E, R, L, V - default: E)
-e2 (choose ensembler 2):	(E, R, L, V - default: L)
--ens_n (ensemble size):	(integer > 1, default: 20)

Note: Valid options for -e1 and -e2: E (EternaFold), R (RNAstructure), L (LinearFold), V (ViennaRNA)

About this tool

This tool performs pairwise RNA secondary structure comparisons at the ensemble level, using the compare_pair algorithm.

The comparison is between method 1 (-e1) and 2 (-e2), user selected among the available options (see Overview, for more details). Input can be in FASTA format or raw sequence. Maximum sequence length is 1000 nucleotides (for larger sequences, use the standalone version)