Description
The Cell Marker Accordion is a user-friendly platform comprising a gene marker database, an interactive R Shiny web application and an R package to automatically annotate and interpret single-cell populations based on consistency weighted
markers.
The Cell Marker Accordion database is built upon multiple published databases of human and mouse gene markers for cell types across multiple tissues, standard collections of widely used cell sorting markers and literature-based marker genes associated with disease-critical cells in multiple pathologies, including liquid and solid tumors.
The Shiny app incorporates reactive programming allowing users to access, explore and download the Cell Marker Accordion database. Furthermore, users can upload custom gene sets to integrate with the Cell Marker Accordion database or identify the closest associated cell type, all without requiring programming skills.
To perfom cell type annotation exploiting the comprehensive Cell Marker Accordion algorithm, we recommend using our R package.
Last update: March 24, 2025
Version: 0.9.7
Category: Single Cell and Spatial Omics
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