Description
ProTN is now a Shiny app that provides an integrated pipeline
for the complete downstream analysis of proteomics, phospho-proteomics, and
interactomics data following peptide quantification. The app features four distinct
workflows—proTN, phosproTN, phosproTN with proteome background, and interacTN—each
accessible through a separate tab in the application menu.
ProTN is compatible with MS-based proteomic experiments processed using Proteome
Discoverer and MaxQuant, two of the most widely used platforms for extracting peptide
abundances from raw MS spectra. For proteome and interactomics analyses, it also
supports input files generated by FragPipe and Spectronaut.
Designed to be user-friendly, fast, and comprehensive, ProTN delivers high-quality
visualizations and tables to facilitate the biological interpretation of results across
a range of experimental setups.
Version: 0.2
Date: 24 July, 2025
Category:Proteomics, Mass Spectrometry
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